PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00519.1.g00280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 390aa    MW: 40740.4 Da    PI: 6.2475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00519.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-082152531255
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Zmw_sc00519.1.g00280.1.am.mk 215 RRERIAERMKALQELVPNA-----NKIDKASMLDEIIDYVKFLQ 253
                                   ******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-7209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-12211263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-9215257No hitNo description
PfamPF000105.3E-6215253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12216262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MQGDGGGGGG QDDFFNQMLS TLPTAWNELG SGKSPWELPA GASEDPAFDE SALLASRLRH  60
HQIGGGGDKP VMLHLSDLHG LAGVGGGEDG GNAGFLPLPL FADRTREDID AAAAAFKSPN  120
AVGGDQALYN GFGAAGMQGA SAVQPPPPFG QVRHEPVPAA DQCQRRASEE AWLRVAGRHR  180
RPERRQEEGR RHRGSNACGR GEGKPRTLTA SPNLRRERIA ERMKALQELV PNANKIDKAS  240
MLDEIIDYVK FLQLQVKVLS MSRLGGASAV APLVANMSSE GNVNGNRSEN GCSSSSLRLT  300
EQQVAKLMEE DTGSAMQYLQ GKGLCLMPIS LASAISATSS SILPRPTVHP TGGAGGTLHD  360
GGSPASPPLG NGACGDDSQT VKDGDAVDRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.11e-137uncharacterized protein LOC100284814
TrEMBLB6TXR41e-137B6TXR4_MAIZE; BHLH transcription factor
STRINGORGLA02G0311000.11e-120(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118